Postdoc: Temperature variation and endangered aquatic species

We are seeking applications for a Postdoctoral Fellow position to work on temperature variation and extinction risk.  It seems likely that the transient dynamics of small populations far from a stable age or size distribution may interact with autocorrelated environmental variation in ways that could significantly increase the extinction risk. In collaboration with National Research Council Canada (CNRC-NRC) and Fisheries and Oceans Canada (DFO), the postdoctoral researcher will examine the impact of autocorrelated temporal variation on the transient dynamics of structured population models of SARA-listed aquatic species. The position will require the analysis of temperature threshold probabilities and autocorrelation in addition to population modelling.

Candidates must hold a PhD in an appropriate discipline (e.g. Ecological modelling, Mathematical Biology, Statistics of Ecological Systems) at the time of appointment and have experience working in a research environment. The anticipated start date is January 2019. This is a one year position with possibility of being renewed for a second year (contingent on funding).  The salary is $42,000 plus health benefits. More information is available at https://uwaterloo.ca/biology/sites/ca.biology/files/uploads/files/postdoc_cuddington_kim.pdf,

To apply, please send the following to Dr. Kim Cuddington via email: kcudding@uwaterloo.ca: 1. A complete CV, 2. A statement on how the applicant can fit the position (max one page), 3. unofficial transcripts, 4. Names and contact information for three referees

Review of applications will begin immediately and continue until a successful candidate is identified.

Postdoctoral research opportunity, Aquatic Microbial Ecology / Carbon Biogeochemistry

Start date: Winter – Spring 2019

Location: Université du Québec à Montréal, Canada

A postgraduate fellowship is available in the Aquatic Ecology Group of the Université du Québec à Montréal (UQÀM), to carry out research at the interface of aquatic microbial ecology and biogeochemistry, associated to the NSERC-funded Research Chair in Carbon Biogeochemistry in Boreal Aquatic Systems. The research project will focus on issues related to the assembly and functioning of freshwater aquatic bacterial communities and their links to environmental factors, and will take a whole network approach to reconstruct the taxonomic, phylogenetic and functional microbial successions that occur along the aquatic continuum, from soils to the sea through interconnected rivers and lakes.

The research may also explore the chemical succession that occurs in the molecular structure and reactivity of the dissolved organic carbon pool along this same aquatic continuum, with the ultimate objective of determining the connections and interactions that may exist between these two key components of all aquatic ecosystems. The project may involve highly spatially resolved sampling along the aquatic continuum and across gradients and ecotones, focusing on lakes and rivers in the boreal region of Québec, and will apply a combination of high-throughput sequencing and microarray technologies, metabolic and physiologic measurements of bacterial communities, and advanced analytical approaches to characterize the molecular composition of DOM.

We seek a highly motivated candidate who is ready to embrace a multidisciplinary challenge and to work in a highly collaborative team context. Our students and postdocs are part of a dynamic and culturally and scientifically diverse aquatic group in the Département des sciences biologiques of the UQÀM, with expertise ranging from nutrient and C biogeochemistry, genomics and bioinformatics, microbial, plankton and ecosystem ecology. Those interested should send a letter of introduction, academic resume, and the names of two references to Paul del Giorgio (del_giorgio.paul@uqam.ca, 514-7957983). E-mail enquiries for further information are welcome.

Postdoctoral Positions in Human-Environment Modelling a at the University of Guelph, Canada for 2019

We are seeking 1-2 postdoctoral fellows to join the Global Ecological Change & Sustainability Laboratory directed by Prof. Madhur Anand (manand@uoguelph.ca) at the University of Guelph, starting in 2019 with experience & interest in one or more of the following:

1. Coupled human-ecological modelling (minimum skills needed: dynamical systems mathematical modelling, advanced computer programming for agent-based modelling) applied to agroecological mosaics, forest dynamics and/or other environmental systems (e.g., Henderson et al. 2016, PNAS).
2. Human-environment network analysis & modelling (applied to a variety of terrestrial ecosystems and human social systems including trade networks of food and other resources (e.g., Fair et al. 2017 Scientific Reports).
3. Vegetation dynamics of forest-grassland (not savanna) mosaics of the world, with potential field work in Brazil and/or India (experience in disturbance ecology, landscape ecology, etc. — sample ecosystem found in Silva & Anand (2011) Ecosystems).

Many collaborative opportunities are available. Please send enquiries (with CV) to manand@uoguelph.ca to initiate discussions. Enquiries will be reviewed beginning November 1, 2018 until a suitable candidate is found. post may been deleted on April 1, 2019

Madhur Anand, Professor
Global Ecological Change (GEC) & Sustainability Laboratory
School of Environmental Sciences, University of Guelph
Guelph, Ontario, N1G 2W1
519-824-4120 x56254; manand@uoguelph.ca
Lab Website:  http://www.uoguelph.ca/~manand/Madhur_Anand

Post-doctoral position, University of Toronto Scarborough

The Weir lab at the University of Toronto Scarborough is looking for a Post-doctoral Researcher to work on avian genomics projects. The lab is developing several genomic-based study systems and has active projects addressing speciation dynamics from a number of Canadian and Amazonian avian hybrid zones, conservation genomics of kiwi, and the genomics of hybrid speciation to list a few. A key focus of the lab is using comparative genomic data to address broad-scale questions in ecology, evolution, and conservation. The successful candidate will work within one of these study systems but will be given freedom to develop their own research questions.

Qualifications: Applicants must have completed a PhD in Evolution, Bioinformatics, Genomics or related discipline within the preceding two years. The applicant should be well versed in coding, working with vertebrate genomic data including familiarity with commonly used pipelines for processing and analysing whole-genome data or reduced genome-datasets.

Salary: $48,000 (plus benefits)

Duration: 2 years

Start Date: Flexible between the dates of March 1 to December 1, 2019.

How to Apply: Please send a curriculum vitae, one-page statement of research skills and interests and copies of two publications to Jason Weir (jason.weir@utoronto.ca) before November 1. Short-listed candidates will be provided with instructions on how to apply for a University of Toronto Scarborough Postdoctoral Fellowship. Eight such fellowships are awarded annually across the campus.

Example genomic publications from the Weir Lab (PDF’s available at https://www.utsc.utoronto.ca/~jweir):

  1. Barrera-Guzman, A. O., A. Aleixo, M. D. Shawkey, J. T. Weir. 2018. Hybrid speciation leads to novel male secondary sexual ornamentation of an Amazonian bird. PNAS. 115: E218-E225.
  2. Weir, J. W., O. Haddrath, H. A. Robertson, R. M. Colbourne, A. J. Baker. 2016. Explosive ice age diversification in kiwi. PNAS. 113: E5580-E5587.
  3. Pulido-Santacruz, P, A. Aleixo, J. T. Weir. 2018. Morphologically cryptic Amazonian bird species pairs exhibit strong post-zygotic reproductive isolation. Proc. R. Soc. B 285: 20172081

OFFRE DE STAGE POSTDOCTORAL, Département des Sciences naturelles – Université du Québec en Outaouais (UQO)

Modélisation spatio-temporelle à l’échelle de l’individu de la population de bélugas du Saint-Laurent

Contexte et objectifs du projet

La population du béluga du Saint-Laurent est actuellement placée sur la liste des espèces en voie de disparition de la Loi sur les espèces en péril du Canada. Elle figure également sur la liste des espèces menacées selon la Loi sur les espèces menacées et vulnérables du Québec. Plusieurs menaces à son rétablissement sont reliées aux activités de navigation qui ont lieu dans son habitat essentiel estival, tels que l’exposition au bruit sous-marin et le dérangement. L’atténuation des impacts de la navigation passe par une évaluation de mesures potentielles en amont de leur implémentation. Le programme de recherche dans lequel s’inscrit le projet du stagiaire postdoctoral vise à construire un simulateur multiagent des déplacements des bélugas et des bateaux dans le Saint- Laurent pour tester l’efficacité de différentes mesures d’atténuation potentielles pour rehausser la protection de la population du béluga du Saint-Laurent dans son habitat essentiel estival.

Le projet vise à construire des algorithmes calibrés reproduisant les déplacements des bélugas du Saint-Laurent à l’échelle de l’individu permettant de reproduire plusieurs patrons statistiques extraits de données. Plusieurs hypothèses cohabitent relativement à la dynamique spatiotemporelle des bélugas. Ces hypothèses seront rendues explicites par le/la stagiaire et l’incertitude sera reflétée par la proposition de plusieurs algorithmes. Le stagiaire devra identifier des patrons à plusieurs échelles (individuelle, troupeau et population) et les extraire des données existantes. Ces patrons lui permettront de calibrer les différents algorithmes et d’en évaluer la performance en utilisant l’approche de modélisation par patrons (Pattern-Oriented Modelling). À partir d’une revue de la littérature, le/la stagiaire devra également proposer des indicateurs d’impacts de la navigation spécifiques au béluga (p.ex. masquage/espace de communication, risques de collision, dérangement) pour évaluer l’efficacité de différents scénarios d’atténuation par couplage avec un modèle du trafic maritime existant. Le développement des algorithmes de déplacement se fera sur la base des théories en écologie comportementale avec la collaboration de chercheurs qui étudient les bélugas depuis plus de 30 ans. Le stagiaire travaillera en collaboration avec ces chercheurs (Groupe de recherche et d’éducation sur les mammifères marins, Pêches et Océans Canada et Parc marin du Saguenay–Saint-Laurent) et pourra avoir l’opportunité de participer à certaines leurs sorties de terrain, sans que son projet ne comporte de phase de collecte de données.

Le/La candidat(e) recherché(e) devra faire preuve de dynamisme, motivation, curiosité, d’initiative, de créativité en plus de démontrer d’excellentes capacités de travail en équipe. Il/Elle sera encouragé(e) à voyager pour des communications scientifiques, et des rencontres avec des partenaires et parties prenantes (financement disponible). Le financement du projet provient du Gouvernement du Québec. Le/La candidat(e) sélectionné(e) participera à la production des livrables aux ministères concernés.

Requis

  • PhD en Sciences naturelles ou génie, ou tout autre domaine pertinent pour la réalisation du projet
  • Expérience en modélisation à l’échelle de l’individu
  • Expérience de programmation en Java (ou autre langage de programmation orienté objet)
  • Capacité à rédiger des demandes de bourses et de financement
  • Habileté à la communication (écrite et orale) à des experts et non experts, incluant la rédaction d’articles scientifiques et la réalisation de revue de littérature

Atouts

  • Connaissances en écologie comportementale, particulièrement les comportements sociaux chez les mammifères
  • Connaissances en acoustique sous-marine et/ou bioacoustique
  • Connaissances en SIG, analyse spatiale et statistiques spatiales
  • Connaissances techniques : R, Python, QGIS et Repast Simphony

Traitement

  • Base de 47k$/an (incluant les avantages sociaux de l’UQO)

Période

Maintenant au 31 mars 2020 (avec possibilité d’extension)

Lieu (flexible)

 • Ripon ou Gatineau (Québec, Canada) de préférence

Postuler

• Envoyer par courriel un CV (forme académique longue), lettre de motivation (détaillant les compétences requises et atouts en lien avec le projet), et le nom et informations de contact de trois références du milieu académique à :

o Pr Clément Chion (clementchion@gmail.com ; clement.chion@uqo.ca)

o Pre Angélique Dupuch (angelique.dupuch@uqo.ca)
• Date limite : 30 septembre 2018, ou jusqu’à ce que le poste soit pourvu.

Postdoctoral and Analyst positions, Marine Food Webs Under Climate Change

Two Postdoctoral Research Positions (Marine Food Webs Under Climate Change):

Description:  The Green Lab at the University of Alberta is searching for two Postdoctoral Researchers to work on a new Lenfest Ocean Program-funded project on marine food webs and climate change in collaboration with the Crowder Lab at Stanford University and NOAA Southwest Fisheries Science Center. The successful applicants will work with a team of researchers and managers in the US and Canada to develop tools for predicting and evaluating distributional shifts in key fisheries species in the California Current Large Marine Ecosystem (CCLME) under climate change. This project entails 1) developing a database of marine species characteristics, 2) conducting multivariate analyses of foraging traits in relation to ecosystem state, 3) developing spatially explicit food web models of the CCLME coupled with ocean climate projections from the Regional Ocean Modelling System, and 4) liaising with project partners and funders to coordinate working group activities.

 Qualifications: Ph.D. in Ecology, Earth Sciences, Environmental Studies, Natural Resource Management, Oceanography, or Computer Science; experience developing and leading research analyses with ecological and/or oceanographic data sets. An interest and background in foraging ecology is an asset, as well as a desire to conduct research that informs management. We seek candidates with skills and experience in the following areas: database creation and management, multivariate statistics, data synthesis and collation, food web modeling, spatial statistics. The applicant must be able to code, perform advanced statistical analyses, develop relationships with managers and scientists, and summarize scientific findings in the form of written manuscripts, oral presentations, and reports to funders and agencies. We welcome applications from individuals with relevant experience and skill sets in non-marine systems as well.

 Setting: The positions will be based at the University of Alberta in Edmonton, Canada, a top five research university in the country. Travel to Monterey, California, for collaboration is also required. Learn more about the host labs here (www.greenlab.ca) and here (https://crowderlab.stanford.edu/).

Salary: $48,000-54,000; commensurate with qualifications and experience.

Start date: Negotiable.

Term of appointment:  Initial appointment is for one year with renewal for year 2 based on a review to assess performance.

To apply: Applications must include a cover letter addressing your interest in the topic and how you meet the qualifications, your CV, one to three writing samples of published material, and contact information for three references. Documents/materials must be submitted in a single PDF file with the position title as the subject header to stephanie.green@ualberta.ca.

Closing date: Application review will begin October 15 2018. The positions will remain open until filled.

Web posting: https://goo.gl/unKDmi

Research Analyst (Marine Food Webs Under Climate Change):

Description: The Green Lab at the University of Alberta is searching for a Research Analyst to work on a new Lenfest Ocean Program-funded project on marine food webs and climate change in collaboration with the Crowder Lab at Stanford University and NOAA Southwest Fisheries Science Center. The successful applicant will work with a team of researchers and managers on a database of marine species characteristics to be used in a model of food web dynamics in the California Current Large Marine Ecosystem (CCLME) under climate change. This two-year project entails 1) contributing to and maintaining a database of marine species characteristics and 2) liaising with the project team and collaborators to coordinate bi-annual working group meetings. Skills required include experience with database management, data synthesis and collation, and scientific writing. An interest and background in foraging ecology is an asset, as well as a desire to conduct research that informs management. Responsibilities include serving as primary and co-author on peer reviewed manuscripts, helping write project reports for funding and management agencies, and assisting with the coordination of a working group.

Qualifications: M.Sc. in Ecology, Biology, Earth Sciences, Environmental Studies, Natural Resource Management or Oceanography; experience working with biological datasets; knowledge of foraging ecology and marine ecosystem dynamics. Experience developing and ideally leading research analyses; database creation and management.

Setting: The position will be based at the University of Alberta in Edmonton, Canada. Travel to Monterey, California, for collaboration is also required. Learn more about the host institutions here (www.greenlab.ca) and here (https://crowderlab.stanford.edu/).

Salary:  Commensurate with qualifications and experience; benefits included.

Start date: Negotiable, but as early as November 2018.

Term of appointment:  Initial appointment is for one year with renewal for year 2 based on a review to assess performance.

To apply: Applications must include a letter of application that addresses your interest in the topic and how you meet the qualifications, your CV, one to three writing samples (of published material), and contact information for three references. Documents/materials must be submitted in a single PDF file with the position title as the email subject to stephanie.green@ualberta.ca.

Closing date: Application review will begin October 1 2018. The position will remain open until filled.

Web posting: https://goo.gl/5jHpQL

POSTDOCTORAL FELLOW POSITION IN BIOINFORMATICS, DEPARTMENT OF BIOLOGICAL SCIENCES, UNIVERSITY OF MANITOBA, CANADA

POSITION NUMBER 26364
POSITION START DATE: January 1, 2019, for 2 years
CLOSING DATE FOR APPLICATIONS: October 15, 2018, or until position is filled
RANK: Post-doctoral fellow
SALARY RANGE: $45,000–$55,000 per annum (plus benefits), commensurate with qualifications and experience
PROJECT OVERVIEW: We are using a genome-wide association study (GWAS) in combination with linked-read whole-genome resequencing in 30 males and 30 females to test for and identify the genetic basis sex determination in sea lamprey. Sex determination mechanisms in fishes are highly variable, ranging from genotypic (GSD) to environmental (ESD) sex determination. Male-biased sex ratios under conditions of high population density or slow growth have led to suggestions of ESD in lampreys, but there is no conclusive evidence in lampreys of ESD, and no fish species with exclusively ESD are known. Understanding the genetic basis of sex determination in lampreys is important given their phylogenetic position as one of only two surviving groups of jawless vertebrates. Furthermore, the sea lamprey is a significant pest in the Laurentian Great Lakes and genetic manipulation of sex determination could be a powerful tool for control. The Principal Investigators on the project are Drs. Margaret Docker and Colin Garroway (Department of Biological Sciences, University of Manitoba) and Dr. Alison Wright (Department of Animal and Plant Sciences, University of Sheffield).
JOB DESCRIPTION: The primary task of this position will be to test for a genetic basis for sex determination in the sea lamprey. However, the PDF will also have the opportunity to develop and pursue his or her own research questions within the context of sea lamprey evolutionary genomics.
RESPONSIBILITIES:
  • To undertake research on the genomics of sex determination in sea lamprey. To contribute significantly to experimental design, data interpretation and statistical analysis.
  • To trial new techniques and assay systems as required and keep abreast of the research literature relevant to the project.
  • Disseminate research through publications in peer reviewed journals.
  • To attend and contribute to research seminars, departmental meetings and international conferences.
  • Carry out administrative roles as required, e.g. organising physical or remote meetings with collaborators, arranging travel to consortium meetings.
  • Perform professional activities such as refereeing papers, editing journals, refereeing research grants, external examining, organising conferences, committee membership and involvement with professional bodies on accreditation.
QUALIFICATIONS:
  • PhD in evolutionary biology, computational biology, or genetics or successful PhD viva at commencement of contract.
  • Proven ability to process and analyse next-generation sequencing data. Experience with Chromium 10X technology is desired but not essential.
  • Proficiency with analysis software and programming languages, as well as ability to write or adapt scripts and pipelines for in silico genetic analysis.
  • Ability to work both collaboratively and independently
  • Well-developed leadership, management and influencing skills
CONTACT: Applicants should send their curriculum vitae, a cover letter expressing their research experience and research interests, and the names of three referees by email to
Dr. Margaret Docker, Professor
Department of Biological Sciences, University of Manitoba
The University of Manitoba is strongly committed to equity and diversity within its community and especially welcomes applications from women, racialized persons/persons of colour, Indigenous peoples, persons with disabilities, persons of all sexual orientations and genders, and others who may contribute to the further diversification of ideas. All qualified candidates are encouraged to apply; however, Canadian citizens and permanent residents will be given priority.
Application materials, including letters of reference, will be handled in accordance with the protection of privacy provision of The Freedom of Information and Protection of Privacy (Manitoba). Please note that curriculum vitae may be provided to participating members of the search process